Analysis Programs
From BrainImagingCenter
Contents |
Program List
In alphabetical order:
Analysis of Functional NeuroImages (AFNI)
Statistical Parametric Mapping (SPM)
PyMVPA
See project's homepage for the information on installation and use. On DBIC's AFS-capable systems, PyMVPA is available under /afs, adjust your PYTHONPATH accordingly.
FSL (FMRIB)
- To run:
$ fsl &
- Environmental variables:
The FSL_DIR environmental variable contains the install dir.
Our current default output file format is ANALYZE. This can be changed with the FSLOUTPUTTYPE environment variable. - Application Directory: /afs/dbic.dartmouth.edu/usr/pkg/fsl
- Installed Version: 3.3.10
- Availability: x86_64, x86, and SPARC
- Application website.
- Download this application.
mri3d
- To run:
multitracer.sh &
- Application Directory: /afs/dbic.dartmouth.edu/usr/pkg/mri3dx
- Installed Version: 31.27
- Availability: x86 and x86_64
- Application website .
- Notes: Recent versions of Linux may not be supported by this software.
MultiTracer
- To run:
multitracer.sh &
- Application Directory: /afs/dbic.dartmouth.edu/usr/pkg/multitracer
- Installed Version: 1.0
- Availability: All (Java)
- Application website.
MRIcro
- To run:
startmricro &
- Application Directory: /afs/dbic.dartmouth.edu/usr/pkg/mricro
- Installed Version: 1.39 build 4
- Availability: x86_64 and x86
- Application website.
MRIcron
mricron &
CARET
$ caret &
The CARET_HOME environmental variable contains the install dir.
SPM (UCL)
- To run:
$ matlab >> spm fmri
- Application Directory: /afs/dbic.dartmouth.edu/usr/pkg/spm
- Installed Version: 99, 2, and 5
- Availability: x86_64, x86, SPARC
- Application website.
- The SPM2 Updates readme.
- The SPM5 Updates readme.
AIR (UCLA)
- To run:
$ align_warp
- Environmental variables:
The AIR_HOME environmental variable contains the install dir. - Application Directory: /afs/dbic.dartmouth.edu/usr/pkg/AIR
- Installed Version: 5.2.5
- Availability: x86_64, x86, SPARC
- Application website.
- Notes:
There are four GUIs (align.tcl, align_warp.tcl, reslice.tcl, reslice_warp.tcl) available. These are written in TCL/TK and should be in the standard PATH. Execute the application name to run.
